Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-31-5p


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Filters
Interactions: 1276, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
ARID1A hsa-miR-31-5p low: 6 high: 0 1 3 1 -
Low-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Nan Wang et al. 2014 O Cervix N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Immunohistochemistry POSITIVE INDIRECT TarBase 7.0
Nan Wang et al. 2014 WB qP Cervix HELA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Nan Wang et al. 2014 WB Cervix C33A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Nan Wang et al. 2014 RP Cervix HELA HEK293 N/A
Location Method Result Regulation Validation Type Source
chr1:26781731-26781760 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Nan Wang et al. 2014 RP Cervix C33A HEK293 N/A
Location Method Result Regulation Validation Type Source
chr1:26781731-26781760 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MAP3K14 hsa-miR-31-5p low: 2 high: 0 2 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Asangani Irfan A. et al. 2012 RP Skin Melanoma Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr17:45263284-45263305 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Jie Ding et al. 2013 RP Liver HCC Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chr17:45263121-45264633 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
RASA1 hsa-miR-31-5p low: 2 high: 0 1 1 1 0.715
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
HU CHENGHUAN et al. 2013 WB Liver HCCC9810 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
HU CHENGHUAN et al. 2013 RP Liver HCCC9810 HCCC9810 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
FAT4 hsa-miR-31-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yu-Hsuan Wu et al. 2011 RP Skin HMEC1 HEK293T N/A
Location Method Result Regulation Validation Type Source
chr4:125318783-125318803 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr4:125316493-125316513 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MET hsa-miR-31-5p low: 1 high: 1 2 2 2 0.665
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Asangani Irfan A. et al. 2012 RP Skin Melanoma Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr7:116796198-116796220 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:116783327-116783349 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ICAM1 hsa-miR-31-5p low: 1 high: 0 1 2 2 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yajaira Su?rez et al. 2010 RP Umbilical Vein HUVEC COS7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yajaira Su?rez et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
RIPK1 hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jie Ding et al. 2013 RP Liver HCC Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chr6:3113355-3115193 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
RRAGA hsa-miR-31-5p low: 1 high: 0 1 1 1 0.492
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
HU CHENGHUAN et al. 2013 WB Liver HCCC9810 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
EIF2AK3 hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
HU CHENGHUAN et al. 2013 WB Liver HCCC9810 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
SELE hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yajaira Su?rez et al. 2010 RP Umbilical Vein HUVEC COS7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
RAB27A hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Asangani Irfan A. et al. 2012 RP Skin Melanoma Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr15:55204317-55204339 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
SRC hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Asangani Irfan A. et al. 2012 RP Skin Melanoma Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr20:37404845-37404866 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
FOXC1 hsa-miR-31-5p low: 0 high: 5 5 5 3 0.800
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr6:1612476-1612497 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A N/A
Location Method Result Regulation Validation Type Source
chr6:1612476-1612497 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:1612476-1612506 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr6:1612673-1612691 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:1612476-1612497 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hafner M. et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Whisnant Adam W et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
SEC23B hsa-miR-31-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:18525842-18525872 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr20:18548674-18548695 PAR-CLIP POSITIVE DIRECT TarBase 7.0
HIAT1 hsa-miR-31-5p low: 0 high: 2 2 2 1 0.885
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:100082421-100082447 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr1:100082421-100082441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CALR hsa-miR-31-5p low: 0 high: 2 2 2 2 0.536
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:12944166-12944190 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr19:12944163-12944187 PAR-CLIP POSITIVE DIRECT TarBase 7.0
HIST1H2BK hsa-miR-31-5p low: 0 high: 2 2 2 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:27146409-27146435 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:27146411-27146432 HITS-CLIP POSITIVE DIRECT TarBase 7.0
STK40 hsa-miR-31-5p low: 0 high: 1 2 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:36340566-36340619 CLASH POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ning Xu et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Helwak Aleksandra et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
EFNA5 hsa-miR-31-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:107378578-107378601 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Chad J Creighton et al. 2010 MA Ovary OVCAR8 N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
UBA6 hsa-miR-31-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:67663151-67663202 CLASH POSITIVE DIRECT TarBase 7.0