Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-31-5p


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Interactions: 1116, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
ARID1A hsa-miR-31-5p low: 6 high: 0 1 3 1 -
Low-throughput experiments (6 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Nan Wang et al. 2014 O Cervix N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Immunohistochemistry POSITIVE INDIRECT TarBase 7.0
Nan Wang et al. 2014 WB qP Cervix HELA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Nan Wang et al. 2014 WB Cervix C33A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
Nan Wang et al. 2014 RP Cervix HELA HEK293 N/A
Location Method Result Regulation Validation Type Source
chr1:26781731-26781760 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Nan Wang et al. 2014 RP Cervix C33A HEK293 N/A
Location Method Result Regulation Validation Type Source
chr1:26781731-26781760 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MAP3K14 hsa-miR-31-5p low: 2 high: 0 2 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Asangani Irfan A. et al. 2012 RP Skin Melanoma Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr17:45263284-45263305 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Jie Ding et al. 2013 RP Liver HCC Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chr17:45263121-45264633 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
RASA1 hsa-miR-31-5p low: 2 high: 0 1 1 1 0.715
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
HU CHENGHUAN et al. 2013 WB Liver HCCC9810 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
HU CHENGHUAN et al. 2013 RP Liver HCCC9810 HCCC9810 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
FAT4 hsa-miR-31-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yu-Hsuan Wu et al. 2011 RP Skin HMEC1 HEK293T N/A
Location Method Result Regulation Validation Type Source
chr4:125318783-125318803 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr4:125316493-125316513 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
MET hsa-miR-31-5p low: 1 high: 1 2 2 2 0.665
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Asangani Irfan A. et al. 2012 RP Skin Melanoma Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr7:116796198-116796220 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:116783327-116783349 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ICAM1 hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yajaira Su?rez et al. 2010 RP Umbilical Vein HUVEC COS7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
RIPK1 hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jie Ding et al. 2013 RP Liver HCC Cell Lines HEK293T N/A
Location Method Result Regulation Validation Type Source
chr6:3113355-3115193 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
RRAGA hsa-miR-31-5p low: 1 high: 0 1 1 1 0.492
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
HU CHENGHUAN et al. 2013 WB Liver HCCC9810 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
EIF2AK3 hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
HU CHENGHUAN et al. 2013 WB Liver HCCC9810 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
SELE hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Yajaira Su?rez et al. 2010 RP Umbilical Vein HUVEC COS7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
RAB27A hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Asangani Irfan A. et al. 2012 RP Skin Melanoma Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr15:55204317-55204339 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
SRC hsa-miR-31-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Asangani Irfan A. et al. 2012 RP Skin Melanoma Cell Lines HEK293 N/A
Location Method Result Regulation Validation Type Source
chr20:37404845-37404866 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
FOXC1 hsa-miR-31-5p low: 0 high: 5 4 4 2 0.800
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:1612476-1612506 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr6:1612673-1612691 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr6:1612476-1612497 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A N/A
Location Method Result Regulation Validation Type Source
chr6:1612476-1612497 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:1612476-1612497 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SEC23B hsa-miR-31-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:18525842-18525872 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr20:18548674-18548695 PAR-CLIP POSITIVE DIRECT TarBase 7.0
HIAT1 hsa-miR-31-5p low: 0 high: 2 2 2 1 0.885
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:100082421-100082447 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr1:100082421-100082441 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CALR hsa-miR-31-5p low: 0 high: 2 2 2 2 0.536
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:12944166-12944190 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Whisnant Adam W et al. 2013 IP Cervix TZMBL N/A shRNAs against HIV-1
Location Method Result Regulation Validation Type Source
chr19:12944163-12944187 PAR-CLIP POSITIVE DIRECT TarBase 7.0
HIST1H2BK hsa-miR-31-5p low: 0 high: 2 2 2 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:27146409-27146435 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:27146411-27146432 HITS-CLIP POSITIVE DIRECT TarBase 7.0
STK40 hsa-miR-31-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:36340566-36340619 CLASH POSITIVE DIRECT TarBase 7.0
EFNA5 hsa-miR-31-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:107378578-107378601 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Chad J Creighton et al. 2010 MA Ovary OVCAR8 N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
UBA6 hsa-miR-31-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helwak Aleksandra et al. 2013 IP Kidney FLPIN_TREX_293 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:67663151-67663202 CLASH POSITIVE DIRECT TarBase 7.0