Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-33b-5p


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Filters
Interactions: 547, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
RORA hsa-miR-33b-5p low: 1 high: 4 2 2 3 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cristina M Ramírez et al. 2013 RP Liver HEPG2 COS7 N/A
Location Method Result Regulation Validation Type Source
chr15:60488677-60489251 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr15:60497468-60497490 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:60497468-60497490 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:60497468-60497490 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr15:60497468-60497490 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cristina M Ramírez et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
PCK1 hsa-miR-33b-5p low: 1 high: 0 1 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cristina M Ramírez et al. 2013 RP Liver HEPG2 COS7 N/A
Location Method Result Regulation Validation Type Source
chr20:57566039-57566131 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cristina M Ramírez et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
CREB1 hsa-miR-33b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cristina M Ramírez et al. 2013 RP Liver HEPG2 COS7 N/A
Location Method Result Regulation Validation Type Source
chr2:207599702-207603229 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
G6PC hsa-miR-33b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cristina M Ramírez et al. 2013 RP Liver HEPG2 COS7 N/A
Location Method Result Regulation Validation Type Source
chr17:42912151-42912169 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
SRC hsa-miR-33b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cristina M Ramírez et al. 2013 RP Liver HEPG2 COS7 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
ZNF281 hsa-miR-33b-5p low: 0 high: 5 4 4 3 0.906
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:200406893-200406917 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Boudreau RL et al. 2014 IP Brain N/A N/A N/A
Location Method Result Regulation Validation Type Source
chr1:200406898-200406915 HITS-CLIP POSITIVE DIRECT TarBase 8.0
chr1:200406898-200406915 HITS-CLIP POSITIVE DIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr1:200406898-200406915 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:200406898-200406915 PAR-CLIP POSITIVE DIRECT TarBase 7.0
ARID5B hsa-miR-33b-5p low: 0 high: 3 3 4 3 0.923
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr10:62093467-62093486 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:62093460-62093483 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A EF3DAGO2 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:62093460-62093480 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Xue Y et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
CAMTA1 hsa-miR-33b-5p low: 0 high: 3 3 3 3 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:7767080-7767105 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Skalsky Rebecca L. et al. 2012 IP N/A LCLBAC N/A N/A
Location Method Result Regulation Validation Type Source
chr1:7767084-7767100 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Eva Gottwein et al. 2011 IP Pleura BC1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:7767084-7767100 PAR-CLIP POSITIVE DIRECT TarBase 7.0
SMAD7 hsa-miR-33b-5p low: 0 high: 2 2 2 2 0.784
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr18:48920084-48920118 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr18:48919983-48920010 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LARP4B hsa-miR-33b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:811385-811410 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr10:811391-811416 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF180 hsa-miR-33b-5p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:44476989-44477014 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Xue Y et al. 2013 IP Cervix HELA N/A Hela cells were treated with control shRNA.
Location Method Result Regulation Validation Type Source
chr19:44476995-44477002 HITS-CLIP POSITIVE DIRECT TarBase 7.0
YWHAH hsa-miR-33b-5p low: 0 high: 1 3 2 2 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:31957353-31957381 Chimeric fragments POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Hafner M. et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Kishore S et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
MED24 hsa-miR-33b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:40019210-40019237 Chimeric fragments POSITIVE DIRECT TarBase 8.0
GOPC hsa-miR-33b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:117563089-117563117 Chimeric fragments POSITIVE DIRECT TarBase 8.0
EED hsa-miR-33b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:86256407-86256434 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TNRC6C hsa-miR-33b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:78049632-78049665 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TNPO1 hsa-miR-33b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:72910337-72910369 Chimeric fragments POSITIVE DIRECT TarBase 8.0
SCAMP1 hsa-miR-33b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:78478300-78478321 Chimeric fragments POSITIVE DIRECT TarBase 8.0
STK24 hsa-miR-33b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr13:98463782-98463805 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TCERG1 hsa-miR-33b-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:146492967-146492989 Chimeric fragments POSITIVE DIRECT TarBase 8.0