Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-34b-3p


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Interactions: 234, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
ZAP70 hsa-miR-34b-3p low: 4 high: 0 1 3 1 -
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Muller Fabbri et al. 2011 qP Bone Marrow K562 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Muller Fabbri et al. 2011 WB qP Bone Marrow BCLL N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Muller Fabbri et al. 2011 RP Bone Marrow MEG01 MEG01 N/A
Location Method Result Regulation Validation Type Source
chr2:97737764-97737799 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
VEGFA hsa-miR-34b-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ye Wenbin et al. 2008 RP Kidney COS7 COS7 N/A
Location Method Result Regulation Validation Type Source
chr6:43784640-43784662 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
TGFBR2 hsa-miR-34b-3p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Jasmine Kaur Ahluwalia et al. 2012 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
STX12 hsa-miR-34b-3p low: 0 high: 3 2 2 2 0.644
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:27822304-27822332 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:27822258-27822281 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr1:27822258-27822281 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TMEM107 hsa-miR-34b-3p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:8173525-8173548 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:8173505-8173532 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr17:8173525-8173548 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CSDE1 hsa-miR-34b-3p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:114719629-114719653 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr1:114719629-114719653 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CAND1 hsa-miR-34b-3p low: 0 high: 2 2 2 2 0.699
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:67305554-67305574 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr12:67316798-67316822 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HSPA9 hsa-miR-34b-3p low: 0 high: 2 2 2 2 0.641
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:138555856-138555870 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr5:138561610-138561631 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LGALS8 hsa-miR-34b-3p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:236549231-236549241 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr1:236537526-236537551 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PTPRJ hsa-miR-34b-3p low: 0 high: 2 2 2 2 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:48168311-48168334 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr11:48168311-48168334 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TMEM70 hsa-miR-34b-3p low: 0 high: 2 2 2 2 0.607
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:73981688-73981711 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr8:73981688-73981711 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PJA2 hsa-miR-34b-3p low: 0 high: 2 2 2 2 0.693
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:109336892-109336899 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Kameswaran V et al. 2014 IP Pancreas BETA Cells N/A N/A
Location Method Result Regulation Validation Type Source
chr5:109336892-109336899 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CBX5 hsa-miR-34b-3p low: 0 high: 2 1 1 1 0.760
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:54239860-54239879 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr12:54238252-54238279 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SF3B1 hsa-miR-34b-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:197400753-197400759 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:197392094-197392118 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ASH1L hsa-miR-34b-3p low: 0 high: 2 1 1 1 0.699
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:155336321-155336340 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:155335450-155335474 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SCARB2 hsa-miR-34b-3p low: 0 high: 2 1 1 1 0.658
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:76160791-76160798 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr4:76159232-76159252 HITS-CLIP POSITIVE DIRECT TarBase 7.0
C5orf28 hsa-miR-34b-3p low: 0 high: 2 1 1 1 0.562
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:43445036-43445042 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:43445019-43445042 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PEA15 hsa-miR-34b-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:160215344-160215364 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:160215344-160215360 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DCP2 hsa-miR-34b-3p low: 0 high: 2 1 1 1 0.854
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:113018848-113018868 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:113018115-113018123 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZBED6 hsa-miR-34b-3p low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Pillai MM et al. 2014 IP Mammary Gland BT474 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:203798757-203798777 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:203797568-203797595 HITS-CLIP POSITIVE DIRECT TarBase 7.0