Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-34b-5p


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Interactions: 710, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
PDGFRA hsa-miR-34b-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 2 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Garofalo M. et al. 2013 RP Lung NSCLC CALU6 N/A
Location Method Result Regulation Validation Type Source
chr4:54297956-54297978 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
chr4:54297927-54297949 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
HNF4A hsa-miR-34b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Anuradha Ramamoorthy et al. 2012 RP Liver HEPG2 HELA N/A
Location Method Result Regulation Validation Type Source
chr20:44429727-44431139 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
YY1 hsa-miR-34b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wang An-Ming et al. 2014 RP Gastric SCM1 SCM1 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
PDGFRB hsa-miR-34b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Garofalo M. et al. 2013 RP Lung NSCLC CALU6 N/A
Location Method Result Regulation Validation Type Source
chr5:150114221-150114243 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
CD276 hsa-miR-34b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Nygren MK. et al. 2014 RP Breast JIMT1 JIMT1 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
SNAI1 hsa-miR-34b-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (0 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helge Siemens et al. 2011 RP Lung H1299 H1299 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay NEGATIVE DIRECT TarBase 8.0
MYC hsa-miR-34b-5p low: 0 high: 14 2 3 2 -
High-throughput experiments (14 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HIST1H1E hsa-miR-34b-5p low: 0 high: 5 2 2 2 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr6:26157047-26157074 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr6:26157047-26157074 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr6:26157047-26157074 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr6:26157047-26157074 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:26157047-26157074 HITS-CLIP POSITIVE DIRECT TarBase 7.0
HOXB8 hsa-miR-34b-5p low: 0 high: 5 1 1 1 0.989
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:48612770-48612783 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:48612770-48612783 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr17:48612770-48612783 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:48612770-48612783 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:48612770-48612783 HITS-CLIP POSITIVE DIRECT TarBase 7.0
UHMK1 hsa-miR-34b-5p low: 0 high: 4 1 1 1 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:162527532-162527552 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr1:162527532-162527552 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:162527532-162527552 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:162527532-162527552 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LAPTM4A hsa-miR-34b-5p low: 0 high: 4 2 2 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr2:20033192-20033209 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr2:20033206-20033222 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:20033192-20033209 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:20033192-20033209 HITS-CLIP POSITIVE DIRECT TarBase 7.0
XIAP hsa-miR-34b-5p low: 0 high: 4 1 1 1 0.707
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chrX:123908471-123908498 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:123908377-123908405 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chrX:123908471-123908498 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chrX:123908377-123908405 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FHL2 hsa-miR-34b-5p low: 0 high: 4 1 2 1 0.466
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:105363350-105363372 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:105363343-105363371 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS27A N/A N/A
Location Method Result Regulation Validation Type Source
chr2:105363350-105363372 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr2:105363343-105363371 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PARP1 hsa-miR-34b-5p low: 0 high: 4 1 1 1 0.465
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:226385562-226385584 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr1:226385562-226385584 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:226385562-226385584 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:226385562-226385584 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GIGYF1 hsa-miR-34b-5p low: 0 high: 4 1 1 1 0.533
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr7:100680297-100680319 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr7:100681248-100681275 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100680297-100680319 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr7:100680095-100680122 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TOP2A hsa-miR-34b-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:40388832-40388859 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:40388832-40388859 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:40388832-40388859 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SOCS7 hsa-miR-34b-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:38403478-38403505 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr17:38401084-38401103 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:38395419-38395443 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PCGF2 hsa-miR-34b-5p low: 0 high: 3 2 2 2 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:38735295-38735320 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:38735295-38735320 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr17:38735295-38735320 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SPEN hsa-miR-34b-5p low: 0 high: 3 1 1 1 0.756
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:15938783-15938808 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:15932781-15932809 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:15932681-15932706 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ARHGDIA hsa-miR-34b-5p low: 0 high: 3 1 1 1 0.551
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:81868642-81868664 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:81868642-81868664 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:81868642-81868664 HITS-CLIP POSITIVE DIRECT TarBase 7.0