Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-34c-5p


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Filters
Interactions: 654, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
MYC hsa-miR-34c-5p low: 4 high: 1 3 3 3 -
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Bone U2OS U2OS N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Braun J et al. 2014 WB qP Bone U2OS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 TR Bone U2OS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN TRAP POSITIVE INDIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Barbara Benassi et al. 2012 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
Braun J et al. 2014 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
H Hermeking et al. 2010 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
ZAP70 hsa-miR-34c-5p low: 4 high: 0 1 4 2 -
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Muller Fabbri et al. 2011 qP Bone Marrow K562 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Muller Fabbri et al. 2011 WB qP Bone Marrow BCLL N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Muller Fabbri et al. 2011 RP Bone Marrow MEG01 MEG01 N/A
Location Method Result Regulation Validation Type Source
chr2:97737644-97737767 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Muller Fabbri et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
HNF4A hsa-miR-34c-5p low: 3 high: 0 2 1 1 -
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhongyan Wang et al. 2013 RP Liver HEPG2 HEPG2 N/A
Location Method Result Regulation Validation Type Source
chr20:44429814-44429836 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
chr20:44429904-44429926 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Anuradha Ramamoorthy et al. 2012 RP Liver HEPG2 HELA N/A
Location Method Result Regulation Validation Type Source
chr20:44429727-44431139 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
PDGFRA hsa-miR-34c-5p low: 3 high: 0 2 2 2 0.956
Low-throughput experiments (2 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Garofalo M. et al. 2013 RP Lung NSCLC CALU6 N/A
Location Method Result Regulation Validation Type Source
chr4:54297956-54297978 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
chr4:54297927-54297949 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Peng Yang et al. 2014 WB Stomach AGS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
PDGFRB hsa-miR-34c-5p low: 2 high: 0 2 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Garofalo M. et al. 2013 RP Lung NSCLC CALU6 N/A
Location Method Result Regulation Validation Type Source
chr5:150114221-150114243 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Peng Yang et al. 2014 WB Stomach AGS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNG hsa-miR-34c-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Siv A Hegre et al. 2013 WB qP Cervix HELA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
UNG hsa-miR-34c-5p low: 1 high: 0 1 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Siv A Hegre et al. 2013 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr12:109097812-109107812 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Siv A Hegre et al. 2013 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
GALNT7 hsa-miR-34c-5p low: 1 high: 0 1 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li W. et al. 2014 RP Hela Contaminant HEP2 HEP2 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li W. et al. 2014 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
YY1 hsa-miR-34c-5p low: 1 high: 0 1 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wang An-Ming et al. 2014 RP Gastric SCM1 SCM1 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wang An-Ming et al. 2014 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
SNAI1 hsa-miR-34c-5p low: 1 high: 0 1 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helge Siemens et al. 2011 RP Lung H1299 H1299 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Other Databases
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helge Siemens et al. 2011 O N/A N/A N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Other UNKNOWN UNKNOWN miRTarBase
NOTCH1 hsa-miR-34c-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cama Alessandro et al. 2013 RP Head/Neck Paraganglioma Cells SHSY5Y N/A
Location Method Result Regulation Validation Type Source
chr9:136495884-136495906 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
ROMO1 hsa-miR-34c-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:35700884-35700911 Chimeric fragments POSITIVE DIRECT TarBase 8.0
WDR74 hsa-miR-34c-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:62841740-62841776 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TMEM132E hsa-miR-34c-5p low: 0 high: 13 1 1 1 -
High-throughput experiments (13 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-34c-5p low: 0 high: 5 1 1 1 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
XBP1 hsa-miR-34c-5p low: 0 high: 4 2 3 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:28795128-28795143 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:28795330-28795355 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr22:28795330-28795355 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:28795311-28795333 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TOP2A hsa-miR-34c-5p low: 0 high: 4 2 2 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Brice Marc et al. 2011 MA Aortic Endothelium HAEC N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:40388832-40388852 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:40388832-40388852 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:40388832-40388852 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZBED4 hsa-miR-34c-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr22:49886779-49886798 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr22:49886779-49886798 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:49886779-49886798 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CHD1 hsa-miR-34c-5p low: 0 high: 3 3 3 3 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:98856098-98856117 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:98856098-98856117 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:98856098-98856117 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SPEN hsa-miR-34c-5p low: 0 high: 3 1 1 1 0.816
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:15938780-15938808 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:15936219-15936242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:15932682-15932706 HITS-CLIP POSITIVE DIRECT TarBase 7.0