Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-34c-5p


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Interactions: 530, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
MYC hsa-miR-34c-5p low: 4 high: 1 1 2 2 -
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 RP Bone U2OS U2OS N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
Braun J et al. 2014 WB qP Bone U2OS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Braun J et al. 2014 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr8:127740982-127741405 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Braun J et al. 2014 TR Bone U2OS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN TRAP POSITIVE INDIRECT TarBase 7.0
ZAP70 hsa-miR-34c-5p low: 4 high: 0 1 3 1 -
Low-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Muller Fabbri et al. 2011 qP Bone Marrow K562 N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Muller Fabbri et al. 2011 WB qP Bone Marrow BCLL N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
Muller Fabbri et al. 2011 RP Bone Marrow MEG01 MEG01 N/A
Location Method Result Regulation Validation Type Source
chr2:97737644-97737767 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
HNF4A hsa-miR-34c-5p low: 3 high: 0 2 1 1 -
Low-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Zhongyan Wang et al. 2013 RP Liver HEPG2 HEPG2 N/A
Location Method Result Regulation Validation Type Source
chr20:44429814-44429836 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
chr20:44429904-44429926 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Anuradha Ramamoorthy et al. 2012 RP Liver HEPG2 HELA N/A
Location Method Result Regulation Validation Type Source
chr20:44429727-44431139 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
PDGFRA hsa-miR-34c-5p low: 3 high: 0 2 2 2 0.956
Low-throughput experiments (2 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Garofalo M. et al. 2013 RP Lung NSCLC CALU6 N/A
Location Method Result Regulation Validation Type Source
chr4:54297956-54297978 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
chr4:54297927-54297949 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Peng Yang et al. 2014 WB Stomach AGS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot NEGATIVE INDIRECT TarBase 7.0
PDGFRB hsa-miR-34c-5p low: 2 high: 0 2 2 2 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Garofalo M. et al. 2013 RP Lung NSCLC CALU6 N/A
Location Method Result Regulation Validation Type Source
chr5:150114221-150114243 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
Peng Yang et al. 2014 WB Stomach AGS N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNG hsa-miR-34c-5p low: 2 high: 0 1 1 1 -
Low-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Siv A Hegre et al. 2013 WB qP Cervix HELA N/A N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Western Blot POSITIVE INDIRECT TarBase 7.0
UNKNOWN qPCR POSITIVE INDIRECT TarBase 7.0
UNG hsa-miR-34c-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Siv A Hegre et al. 2013 RP Cervix HELA HELA N/A
Location Method Result Regulation Validation Type Source
chr12:109097812-109107812 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
GALNT7 hsa-miR-34c-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Li W. et al. 2014 RP Hela Contaminant HEP2 HEP2 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
YY1 hsa-miR-34c-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wang An-Ming et al. 2014 RP Gastric SCM1 SCM1 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
SNAI1 hsa-miR-34c-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Helge Siemens et al. 2011 RP Lung H1299 H1299 N/A
Location Method Result Regulation Validation Type Source
UNKNOWN Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
NOTCH1 hsa-miR-34c-5p low: 1 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Cama Alessandro et al. 2013 RP Head/Neck Paraganglioma Cells SHSY5Y N/A
Location Method Result Regulation Validation Type Source
chr9:136495884-136495906 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
ROMO1 hsa-miR-34c-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr20:35700884-35700911 Chimeric fragments POSITIVE DIRECT TarBase 8.0
WDR74 hsa-miR-34c-5p low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Grosswendt S et al. 2014 IP Kidney HEK293 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:62841740-62841776 Chimeric fragments POSITIVE DIRECT TarBase 8.0
TMEM132E hsa-miR-34c-5p low: 0 high: 13 1 1 1 -
High-throughput experiments (13 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:emetine
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr17:34638045-34638072 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MYC hsa-miR-34c-5p low: 0 high: 5 1 1 1 -
High-throughput experiments (5 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr8:127741080-127741102 HITS-CLIP POSITIVE DIRECT TarBase 7.0
XBP1 hsa-miR-34c-5p low: 0 high: 4 2 3 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Pleura BC3 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:28795128-28795143 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr22:28795330-28795355 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HMSC N/A N/A
Location Method Result Regulation Validation Type Source
chr22:28795330-28795355 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr22:28795311-28795333 HITS-CLIP POSITIVE DIRECT TarBase 7.0
TOP2A hsa-miR-34c-5p low: 0 high: 4 2 2 2 -
High-throughput experiments (4 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Brice Marc et al. 2011 MA Aortic Endothelium HAEC N/A 48hrs post-transfection, Overexpression
Location Method Result Regulation Validation Type Source
UNKNOWN Microarrays POSITIVE INDIRECT TarBase 8.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr17:40388832-40388852 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr17:40388832-40388852 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr17:40388832-40388852 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZBED4 hsa-miR-34c-5p low: 0 high: 3 1 1 1 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr22:49886779-49886798 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: emetine
Location Method Result Regulation Validation Type Source
chr22:49886779-49886798 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A no treatment (control)
Location Method Result Regulation Validation Type Source
chr22:49886779-49886798 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CHD1 hsa-miR-34c-5p low: 0 high: 3 3 3 3 -
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Skalsky Rebecca L. et al. 2012 IP N/A LCLBACD3 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:98856098-98856117 PAR-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr5:98856098-98856117 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Balakrishnan I et al. 2014 IP Bone Marrow HS5 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:98856098-98856117 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SPEN hsa-miR-34c-5p low: 0 high: 3 1 1 1 0.816
High-throughput experiments (3 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Karginov FV et al. 2013 IP Kidney 293S N/A treatment: arsenite
Location Method Result Regulation Validation Type Source
chr1:15938780-15938808 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:15936219-15936242 HITS-CLIP POSITIVE DIRECT TarBase 7.0
Karginov FV et al. 2013 IP Kidney 293S N/A treatment:hippuristanol
Location Method Result Regulation Validation Type Source
chr1:15932682-15932706 HITS-CLIP POSITIVE DIRECT TarBase 7.0