Please cite:
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou; DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions, Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141
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hsa-miR-520h


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Interactions: 51, Experiments: (low: , high: , unknown: ) Cell lines: , Tissues: , Publications:
Gene name miRNA name Experiments
throughput
Publications Cell lines Tissues Pred. Score
VEGFA hsa-miR-520h low: 2 high: 0 1 1 1 -
Low-throughput experiments (1 positive, 1 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Ye Wenbin et al. 2008 RP RP Kidney COS7 COS7 N/A
Location Method Result Regulation Validation Type Source
chr6:43785338-43785362 Luciferase Reporter Assay POSITIVE DIRECT TarBase 7.0
chr6:43784727-43784747 Luciferase Reporter Assay NEGATIVE DIRECT TarBase 7.0
CDKN1A hsa-miR-520h low: 1 high: 1 2 2 2 -
Low-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Wu S et al. 2010 RP Kidney HEK293 HEK293 N/A
Location Method Result Regulation Validation Type Source
chr6:36685816-36687315 Luciferase Reporter Assay POSITIVE DIRECT TarBase 8.0
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr6:36686933-36686955 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SNX18 hsa-miR-520h low: 0 high: 2 1 1 1 0.815
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:54543717-54543745 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr5:54543270-54543291 HITS-CLIP POSITIVE DIRECT TarBase 7.0
FAM46C hsa-miR-520h low: 0 high: 2 1 1 1 -
High-throughput experiments (2 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:117625284-117625306 HITS-CLIP POSITIVE DIRECT TarBase 7.0
chr1:117624162-117624187 HITS-CLIP POSITIVE DIRECT TarBase 7.0
SLC35F5 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:113715035-113715056 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KLF10 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr8:102649318-102649342 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ATP2C1 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr3:130894715-130894737 HITS-CLIP POSITIVE DIRECT TarBase 7.0
LMO3 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:16600672-16600698 HITS-CLIP POSITIVE DIRECT TarBase 7.0
KMT2C hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:152157877-152157895 HITS-CLIP POSITIVE DIRECT TarBase 7.0
WDR3 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr1:117946123-117946145 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DNM2 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:10831839-10831861 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CNOT4 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr7:135388195-135388217 HITS-CLIP POSITIVE DIRECT TarBase 7.0
CEP128 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr14:80497216-80497224 HITS-CLIP POSITIVE DIRECT TarBase 7.0
PLEKHJ1 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:2234205-2234229 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ZNF574 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr19:42078712-42078739 HITS-CLIP POSITIVE DIRECT TarBase 7.0
GAB1 hsa-miR-520h low: 0 high: 1 1 1 1 0.683
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr4:143439861-143439889 HITS-CLIP POSITIVE DIRECT TarBase 7.0
DDX6 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr11:118755450-118755475 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ELK3 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr12:96269791-96269813 HITS-CLIP POSITIVE DIRECT TarBase 7.0
ATP6V0E1 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr5:173034539-173034560 HITS-CLIP POSITIVE DIRECT TarBase 7.0
MSH6 hsa-miR-520h low: 0 high: 1 1 1 1 -
High-throughput experiments (1 positive, 0 negative)
Publication Methods Tissue Cell line Tested cell line Exp. condition
Haecker Irina et al. 2012 IP Bone Marrow BCBL1 N/A N/A
Location Method Result Regulation Validation Type Source
chr2:47806822-47806845 HITS-CLIP POSITIVE DIRECT TarBase 7.0